Studies
|
38,585 |
|
Biosamples
|
64,419 |
|
Sequencing Projects
|
283,712 |
|
Analysis Projects
|
228,002 |
| Organisms | 361,121 |
| ANALYSIS PROJECT INFORMATION | |||||||
|---|---|---|---|---|---|---|---|
|
GOLD Analysis Project ID
|
Ga0104439 |
||||||
| Analysis Project Name Prefix |
Nocardiopsis flavescens CGMCC 4.5723 |
||||||
|
Analysis Project Name Suffix
|
|
||||||
|
Analysis Project Type
|
Genome Analysis |
||||||
|
IMG Submission ID
|
88923 |
||||||
| Completion Status |
Complete |
||||||
|
Completion Date
|
2016-06-15 |
||||||
| PI | William Whitman | ||||||
|
Description
|
|
||||||
| Visibility | Public | ||||||
| ANALYSIS PROJECT METADATA | |||||||
|
Assembly Method
(MIGS-30)
|
ALLPATHS v. r46652 |
||||||
|
IMG Decontamination
|
Yes |
||||||
|
IMG Decontamination Method
|
PhiX decontamination |
||||||
| GenePRIMP |
|
||||||
|
Scaffold Count
|
71 |
||||||
|
Contig Count
|
|
||||||
|
Gene Calling Method
(MIGS-32)
|
|
||||||
| Gene Count |
6291 |
||||||
| Estimated Size |
7172933 |
||||||
|
Sequencing Depth
(MIGS-31.1)
|
100x |
||||||
| Annotation Pipeline |
IMG Annotation Pipeline v.4.11.2 |
||||||
| Added By |
JGI automated process
on 2016-01-08 |
||||||
| Last Modified By |
JGI automated process
on 2019-03-08 |
||||||
| Non-SP-Owner AP |
No |
||||||
| PROJECT EXTERNAL REFERENCES | |||||||
|
IMG Taxon ID
|
2675903133 |
||||||
| IMG RNA-Seq ID |
|
||||||
|
Genbank
|
|
||||||
| Assembly Accession |
GCA_900141985.1 |
||||||
| ANALYSIS PROJECT COMPOSITION | |||||||
| Study |
Genomic Encyclopedia of Type Strains, Phase III (KMG-III): the genomes of soil and plant-associated and newly described type strains |
||||||
|
Number of Studies
|
1 |
||||||
|
Number of Projects
|
1 |
||||||
|
Number of Related Analysis Projects
|
0 |
||||||
|
Derived Analysis Projects
|
0 |
||||||
| JGI INFORMATION | |||||||
|
ITS Analysis Project ID
|
1085023 (Portal) |
||||||
|
ITS Analysis Project Name
|
Nocardiopsis flavescens CGMCC 4.5723 |
||||||
|
ITS Analysis Product Name
|
Microbial Minimal Draft Isolate Genome |
||||||
| ITS NCBI Taxon ID |
|
||||||
| ITS Version Number |
1 |
||||||
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