ANALYSIS PROJECT INFORMATION
GOLD Analysis Project ID Ga0068231
Analysis Project Name Prefix Methylobacterium sp. UNCCL143
Analysis Project Name Suffix
Analysis Project Type Genome Analysis
IMG Submission ID 59244
Completion Status Complete
Completion Date 2015-03-10
PI Jeff Dangl
Description Paired-end (PE) reads were merged using FLASH v1.2.8 and then quality controlled using Sickle v1.3. The HQ PE and single end reads (reads where the pair was removed due to low quality) were assembled jointly using SPAdes-v3.0.0
Visibility Public
ANALYSIS PROJECT METADATA
Assembly Method (MIGS-30) SPAdes-3.0.0
IMG Decontamination No
IMG Decontamination Method
GenePRIMP No
Scaffold Count 147
Contig Count
Gene Calling Method (MIGS-32)
Gene Count 6357
Estimated Size 6606012
Sequencing Depth (MIGS-31.1)
Annotation Pipeline
Added By Scott Yourstone on 2015-03-03
Last Modified By JGI automated process on 2018-02-14
Non-SP-Owner AP No
PROJECT EXTERNAL REFERENCES
IMG Taxon ID 2606217776
IMG RNA-Seq ID
Genbank
Assembly Accession
SRA Runs
ANALYSIS PROJECT COMPOSITION
Study Plant associated metagenomes--Microbial community diversity and host control of community assembly across model and emerging plant ecological genomics systems.
Number of Studies 1
Number of Projects 1
Number of Related Analysis Projects 0
Derived Analysis Projects 0

 

 

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