Studies
|
53,970 |
|
Biosamples
|
170,233 |
|
Sequencing Projects
|
480,729 |
|
Analysis Projects
|
361,701 |
| Organisms | 467,880 |
| ANALYSIS PROJECT INFORMATION | |||||
|---|---|---|---|---|---|
|
GOLD Analysis Project ID
|
Ga0029757 |
||||
| Analysis Project Name |
Pseudopedobacter saltans DSM 12145 |
||||
|
Analysis Project Name Suffix
|
|
||||
|
Analysis Project Type
|
Genome Analysis (Isolate) |
||||
|
IMG Submission ID
|
|||||
| Completion Status |
Complete |
||||
|
IMG Completion Date
|
2011-03-26 |
||||
| PI | Jonathan Eisen | ||||
|
Analysis Project Description
|
|
||||
| Visibility | Public | ||||
| ANALYSIS PROJECT METADATA | |||||
|
Assembly Method
(MIGS-30)
|
Newbler v. 2.3, Velvet v. 0.7.63, Phrap v. 4.24 SPS |
||||
|
IMG Decontamination
|
No |
||||
|
IMG Decontamination Method
|
|
||||
|
Scaffold Count
|
1 |
||||
|
Contig Count
|
|
||||
|
Gene Calling Method
(MIGS-32)
|
Prodigal 2.5, GenePRIMP |
||||
| Gene Count |
3921 |
||||
| Estimated Size |
4635236 |
||||
|
Sequencing Depth
(MIGS-31.1)
|
645x (Illumina), 19.5x (pyrosequence) |
||||
| Genbank Anomalous Assembly |
No |
||||
| Genbank Anomalous Reason |
|
||||
| Annotation Pipeline |
IMG/W 3.4 |
||||
| Added By |
Jonathan Eisen
on 2010-01-02 |
||||
| Last Modified By |
JGI automated process
on 2022-07-01 |
||||
|
ORF Comparison Tools
|
|
||||
| PROJECT EXTERNAL REFERENCES | |||||
|
IMG Taxon ID
|
649633082 |
||||
|
Genbank Accession
|
|
||||
| Genbank Release Date |
2014-01-02 |
||||
| ANALYSIS PROJECT COMPOSITION | |||||
| Study |
A Genomic Encyclopedia of Bacteria and Archaea (GEBA) |
||||
|
Number of Studies
|
1 |
||||
|
Number of Projects
|
1 |
||||
|
Number of Related Analysis Projects
|
0 |
||||
| JGI INFORMATION | |||||
|
JGI Data Utilization Status
|
Restricted |
||||
|
ITS Analysis Project ID
|
1377704 (Portal) |
||||
|
ITS Analysis Project Name
|
Pseudopedobacter saltans DSM 12145 |
||||
|
ITS Analysis Product Name
|
Microbial Minimal Draft Isolate Genome |
||||
| ITS Version Number |
1 |
||||
|
JGI Award DOI
|
10.46936/10.25585/60007482 |
||||
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