Studies
|
38,694 |
|
Biosamples
|
80,867 |
|
Sequencing Projects
|
302,591 |
|
Analysis Projects
|
245,008 |
| Organisms | 360,848 |
| ANALYSIS PROJECT INFORMATION | |||||||
|---|---|---|---|---|---|---|---|
|
GOLD Analysis Project ID
|
Ga0001120 |
||||||
| Analysis Project Name Prefix |
Salinispora arenicola CNY282 |
||||||
|
Analysis Project Name Suffix
|
|
||||||
|
Analysis Project Type
|
Genome Analysis |
||||||
|
IMG Submission ID
|
12635 |
||||||
| Completion Status |
Complete |
||||||
|
Completion Date
|
2013-02-01 |
||||||
| PI | paul r. jensen | ||||||
|
Description
|
|
||||||
| Visibility | Public | ||||||
| ANALYSIS PROJECT METADATA | |||||||
|
Assembly Method
(MIGS-30)
|
Velvet v. 1.1.04, ALLPATHS v. R41043 |
||||||
|
IMG Decontamination
|
No |
||||||
|
IMG Decontamination Method
|
|
||||||
| GenePRIMP |
No |
||||||
|
Scaffold Count
|
67 |
||||||
|
Contig Count
|
74 |
||||||
|
Gene Calling Method
(MIGS-32)
|
Prodigal 2.5 |
||||||
| Gene Count |
5236 |
||||||
| Estimated Size |
5755139 |
||||||
|
Sequencing Depth
(MIGS-31.1)
|
|
||||||
| Annotation Pipeline |
|
||||||
| Added By |
paul r. jensen
on 2012-07-05 |
||||||
| Last Modified By |
JGI automated process
on 2017-06-04 |
||||||
| Non-SP-Owner AP |
No |
||||||
| PROJECT EXTERNAL REFERENCES | |||||||
|
IMG Taxon ID
|
2521172655 |
||||||
| IMG RNA-Seq ID |
|
||||||
|
Genbank
|
|
||||||
| Assembly Accession |
GCA_000378705.1 |
||||||
| SRA Runs |
|
||||||
| ANALYSIS PROJECT COMPOSITION | |||||||
| Study |
Genome sequencing of the marine actinomycete Salinispora pacifica |
||||||
|
Number of Studies
|
1 |
||||||
|
Number of Projects
|
1 |
||||||
|
Number of Related Analysis Projects
|
0 |
||||||
|
Derived Analysis Projects
|
0 |
||||||
| JGI INFORMATION | |||||||
|
ITS Analysis Project ID
|
1007313 (Portal) |
||||||
|
ITS Analysis Project Name
|
Salinispora arenicola CNY-282 |
||||||
|
ITS Analysis Product Name
|
Microbial Minimal Draft Isolate Genome |
||||||
| ITS NCBI Taxon ID |
|
||||||
| ITS Version Number |
1 |
||||||
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