ANALYSIS PROJECT INFORMATION
GOLD Analysis Project ID Ga0573184
Analysis Project Name Lab enriched sediment microbial communities from hydrocarbon-contaminated retail site, Toronto, Canada - Cartch44A2 msp
Analysis Project Name Stem Lab enriched sediment microbial communities from hydrocarbon-contaminated retail site, Toronto, Canada - Cartch44A2
Analysis Project Name Suffix msp
Analysis Project Type Metagenome Analysis
IMG Submission ID 282876
Completion Status Complete
IMG Completion Date 2022-10-04
PI Elizabeth A. Edwards
Analysis Project Description metaspades assembly 10% using subsampled reads
Visibility Public
ANALYSIS PROJECT METADATA
Assembly Method (MIGS-30) Spades v. 3.14.1
Scaffold Count 186578
Contig Count
Gene Calling Method (MIGS-32)
Gene Count 251779
Estimated Size 104388897
Sequencing Depth (MIGS-31.1)
Genbank Anomalous Assembly
Genbank Anomalous Reason
Annotation Pipeline IMG Annotation Pipeline v.5.1.10
Added By Camilla Nesbø on 2022-08-20
Last Modified By JGI automated process on 2022-10-05
ORF Comparison Tools
PROJECT EXTERNAL REFERENCES
IMG Taxon ID 3300057059
IMG Metagenome bin count 0
IMG Predicted viruses
Genbank Accession
Genbank Release Date
SRA Runs
ANALYSIS PROJECT COMPOSITION
Study Metagenomes from methanogenic benzene-degrading cultures
Number of Studies 1
Number of Biosamples 1
Number of Projects 1
Number of Related Analysis Projects 1
Derived Analysis Projects (DAP) 0

 

 

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