ANALYSIS PROJECT INFORMATION
GOLD Analysis Project ID Ga0435270
Analysis Project Name Prefix Metatranscriptome of rumen fluid microbial communities from dairy cow in UC Davis, California, USA - UCD_Rumen_Seaweed_2631
Analysis Project Name Suffix
Analysis Project Type Metatranscriptome Analysis
IMG Submission ID 232069
Completion Status Complete
IMG Completion Date 2020-04-27
PI Breanna Roque
PI Name
Analysis Project Description
Visibility Public
ANALYSIS PROJECT METADATA
Assembly Method (MIGS-30) megahit v. MEGAHIT v1.1.2
Scaffold Count 406445
Contig Count
Gene Calling Method (MIGS-32)
Gene Count 458633
Estimated Size 232656343
Sequencing Depth (MIGS-31.1)
Annotation Pipeline IMG Annotation Pipeline v.5.0.15
Added By JGI automated process on 2020-02-04
Last Modified By JGI automated process on 2020-04-27
ORF Comparison Tools
16S Recovered
16S Recovery Software
PROJECT EXTERNAL REFERENCES
IMG Taxon ID 3300039247
IMG RNA-Seq ID
Genbank Accession
Assembly Accession
Genbank Release Date
SRA Runs
ANALYSIS PROJECT COMPOSITION
Study Rumen fluid microbial communities from dairy cows in UC Davis, California, USA
Number of Studies 1
Number of Biosamples 1
Number of Projects 1
Number of Related Analysis Projects 3
JGI INFORMATION
ITS Analysis Project ID 1272475 (Portal)
ITS Analysis Project Name UCD_Rumen_Metatranscriptome_Seaweed_2631 Annotation (FastSelect)
ITS Analysis Product Name Metagenome Metatranscriptome
ITS Version Number 2

 

 

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