ANALYSIS PROJECT INFORMATION
GOLD Analysis Project ID Ga0434823
Analysis Project Name Prefix Metatranscriptome of Chicken small intestine microbial community from Willmar, Minnesota, USA - 4W-C5
Analysis Project Name Suffix
Analysis Project Type Metatranscriptome Analysis
IMG Submission ID
Completion Status Incomplete
IMG Completion Date
PI
PI Name
Analysis Project Description Assembly and annotation of public SRA data set.
Visibility Public
ANALYSIS PROJECT METADATA
Assembly Method (MIGS-30) Custom JGI assembly.
Scaffold Count
Contig Count
Gene Calling Method (MIGS-32)
Gene Count
Estimated Size
Sequencing Depth (MIGS-31.1)
Annotation Pipeline
Added By JGI automated process on 2020-01-29
Last Modified By
ORF Comparison Tools
16S Recovered
16S Recovery Software
PROJECT EXTERNAL REFERENCES
IMG Taxon ID
IMG RNA-Seq ID
Genbank Accession
Assembly Accession
Genbank Release Date
SRA Runs
 
SRA Run Id SRR3135326  (Link to NCBI )
ANALYSIS PROJECT COMPOSITION
Study Chicken small intestine microbial community from Willmar, Minnesota, USA
Number of Studies 1
Number of Biosamples 1
Number of Projects 1
Number of Related Analysis Projects 0

 

 

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