ANALYSIS PROJECT INFORMATION
GOLD Analysis Project ID Ga0415072
Analysis Project Name Prefix Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 041410CS metaT
Analysis Project Name Suffix
Analysis Project Type Metatranscriptome Analysis
IMG Submission ID
Completion Status Incomplete
IMG Completion Date
PI
Description Assembly and annotation of public SRA data set.
Visibility Public
ANALYSIS PROJECT METADATA
Assembly Method (MIGS-30) Custom JGI assembly.
IMG Decontamination
IMG Decontamination Method
GenePRIMP
Scaffold Count
Contig Count
Gene Calling Method (MIGS-32)
Gene Count
Estimated Size
Sequencing Depth (MIGS-31.1)
Annotation Pipeline
Added By JGI automated process on 2019-10-04
Last Modified By
Non-SP-Owner AP No
PROJECT EXTERNAL REFERENCES
IMG Taxon ID
IMG RNA-Seq ID
Genbank
Assembly Accession
Genbank Release Date
SRA Runs
 
SRA Run Id SRR6824981  (Link to NCBI )
ANALYSIS PROJECT COMPOSITION
Study Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia
Number of Studies 1
Number of Biosamples 1
Number of Projects 1
Number of Related Analysis Projects 2
Derived Analysis Projects 0

 

 

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