ANALYSIS PROJECT INFORMATION
GOLD Analysis Project ID Ga0415068
Analysis Project Name Prefix Leaf-associated microbial communities from Pinus contorta in Yosemite National Park, California, United States - Lodgepole_Yose_3
Analysis Project Name Suffix
Analysis Project Type Metagenome Analysis
IMG Submission ID
Completion Status Incomplete
IMG Completion Date
PI
Description Assembly and annotation of public SRA data set.
Visibility Public
ANALYSIS PROJECT METADATA
Assembly Method (MIGS-30) Custom JGI assembly.
IMG Decontamination
IMG Decontamination Method
GenePRIMP
Scaffold Count
Contig Count
Gene Calling Method (MIGS-32)
Gene Count
Estimated Size
Sequencing Depth (MIGS-31.1)
Annotation Pipeline
Added By JGI automated process on 2019-10-04
Last Modified By
Non-SP-Owner AP No
PROJECT EXTERNAL REFERENCES
IMG Taxon ID
IMG RNA-Seq ID
Genbank
Assembly Accession
Genbank Release Date
SRA Runs
 
SRA Run Id SRR7072108  (Link to NCBI )
ANALYSIS PROJECT COMPOSITION
Study Above-ground endophytic microbial communities from plants in different locations in the United States
Number of Studies 1
Number of Biosamples 1
Number of Projects 1
Number of Related Analysis Projects 1
Derived Analysis Projects 0

 

 

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