ANALYSIS PROJECT INFORMATION
GOLD Analysis Project ID Ga0401873
Analysis Project Name Prefix Metatranscriptome of soil microbial communities from Everglades Agricultural Area, Florida, United States - EAA2017_July_plot5_rep1
Analysis Project Name Suffix
Analysis Project Type Metatranscriptome Analysis
IMG Submission ID 226809
Completion Status Complete
IMG Completion Date 2020-02-29
PI Willm Martens-Habbena
Analysis Project Description
Visibility Public
ANALYSIS PROJECT METADATA
Assembly Method (MIGS-30) megahit v. MEGAHIT v1.1.2
Scaffold Count 408225
Contig Count
Gene Calling Method (MIGS-32)
Gene Count 456560
Estimated Size 190971127
Sequencing Depth (MIGS-31.1)
Annotation Pipeline IMG Annotation Pipeline v.5.0.11
Added By JGI automated process on 2019-10-03
Last Modified By JGI automated process on 2021-11-07
ORF Comparison Tools
PROJECT EXTERNAL REFERENCES
IMG Taxon ID 3300037702
IMG RNA-Seq ID
Genbank Accession
Genbank Release Date
SRA Runs
ANALYSIS PROJECT COMPOSITION
Study Soil microbial communities from Everglades Agricultural Area, Florida, United States
Number of Studies 1
Number of Biosamples 1
Number of Projects 1
Number of Related Analysis Projects 2
JGI INFORMATION
JGI Data Utilization Status Unrestricted
ITS Analysis Project ID 1228686 (Portal)
ITS Analysis Project Name EAA2017_July_plot5_rep1 metatranscriptome Annotation
ITS Analysis Product Name Metagenome Metatranscriptome
ITS Version Number 1

 

 

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