ANALYSIS PROJECT INFORMATION
GOLD Analysis Project ID Ga0400289
Analysis Project Name Prefix Metatranscriptome of photosynthetic mat microbial communities from Mushroom Spring, YNP, Wyoming, United States - 20090729 2005 sample R3cd
Analysis Project Name Suffix
Analysis Project Type Metatranscriptome Analysis
IMG Submission ID 226854
Completion Status Complete
IMG Completion Date 2020-03-02
PI Devaki Bhaya
Description
Visibility Public
ANALYSIS PROJECT METADATA
Assembly Method (MIGS-30) megahit v. MEGAHIT v1.1.2
Scaffold Count 148121
Contig Count
Gene Calling Method (MIGS-32)
Gene Count 192679
Estimated Size 92147546
Sequencing Depth (MIGS-31.1)
Annotation Pipeline IMG Annotation Pipeline v.5.0.12
Added By JGI automated process on 2019-08-28
Last Modified By JGI automated process on 2020-03-03
Non-SP-Owner AP No
PROJECT EXTERNAL REFERENCES
IMG Taxon ID 3300037750
IMG RNA-Seq ID
Genbank Accession
Assembly Accession
Genbank Release Date
SRA Runs
ANALYSIS PROJECT COMPOSITION
Study Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States
Number of Studies 1
Number of Biosamples 1
Number of Projects 1
Number of Related Analysis Projects 1
JGI INFORMATION
ITS Analysis Project ID 1254931 (Portal)
ITS Analysis Project Name Metatranscriptome of hot spring photosynthetic mat communities from Mushroom Spring 20090729 2005 sample R3cd Annotation
ITS Analysis Product Name Metagenome Metatranscriptome
ITS Version Number

 

 

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