Studies
|
56,011 |
|
Biosamples
|
183,990 |
|
Sequencing Projects
|
508,072 |
|
Analysis Projects
|
381,502 |
| Organisms | 480,513 |
| ANALYSIS PROJECT INFORMATION | |
|---|---|
|
GOLD Analysis Project ID
|
Ga0374888 |
| Analysis Project Name |
Dehalobacter sp. BinHCHmb12 |
|
Analysis Project Name Suffix
|
|
|
Analysis Project Type
|
Metagenome-Assembled Genome |
|
IMG Submission ID
|
210463 |
|
NCBI BioProject Accession
|
|
|
NCBI BioSample Accession
|
|
| Completion Status |
Complete |
|
IMG Completion Date
|
2019-05-29 |
| PI | Elizabeth A. Edwards |
|
Analysis Project Description
|
Dehalobacter MAG abundant in enrichment culture on lindane |
| Visibility | Public |
| ANALYSIS PROJECT METADATA | |
| GOLD Organism Name |
Dehalobacter sp. BinHCHmb12 |
|
NCBI Taxonomy ID
|
56112 |
| Phylum | FIRMICUTES |
| Phylogeny Suggestion |
|
|
Genus
|
Dehalobacter |
| Species |
Dehalobacter sp. BinHCHmb12 |
| Strain |
BinHCHmb12 |
| Domain |
BACTERIAL |
| NCBI Superkingdom |
Bacteria |
| NCBI Kingdom |
|
|
Number of tRNAs
|
|
|
tRNA Software
|
|
|
Completeness Strategy
|
|
|
Scaffold Count
|
14 |
|
Contig Count
|
|
|
Binning Method
|
metabat v2.12 |
|
Binning Parameters
|
|
|
Reassembly Attempted
|
|
|
MAG Coverage Software
|
|
|
Gene Calling Method
(MIGS-32)
|
|
| Gene Count |
2564 |
| Estimated Size |
2541396 |
|
Sequencing Depth
(MIGS-31.1)
|
|
| Contamination Percentage |
|
| Completeness Percentage |
|
| Genbank Anomalous Assembly |
|
| Genbank Anomalous Reason |
|
| Annotation Pipeline |
IMG Annotation Pipeline v.5.0.1 |
| Added By | Camilla Nesbø on 2019-04-13 |
| Last Modified By | JGI automated process on 2019-06-09 |
|
ORF Comparison Tools
|
|
|
16S Recovered
|
|
|
16S Recovery Software
|
|
| PROJECT EXTERNAL REFERENCES | |
|
IMG Taxon ID
|
2823892816 |
|
Genbank Accession
|
|
| Genbank Release Date |
|
| Genome Publication |
|
| ANALYSIS PROJECT COMPOSITION | |
| Study |
Metagenomes of anaerobic enrichment cultures that dechlorinate hexachlorocyclohexane isomers |
| Source Analysis Project |
Lab-enriched soil microbial communities from a contaminated agricultural site, Guadeloupe, France - GT4SUHCH MSP |
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