ANALYSIS PROJECT INFORMATION | |
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GOLD Analysis Project ID
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Ga0374545 |
Analysis Project Name Prefix |
Metatranscriptome of marine sediment microbial communities from Baltic Sea, Sweden - 28L |
Analysis Project Name Suffix
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Analysis Project Type
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Metatranscriptome Analysis |
IMG Submission ID
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215432 |
Completion Status |
Complete |
IMG Completion Date
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2019-11-20 |
PI | Samuel Hylander |
PI Name |
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Analysis Project Description
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Visibility | Public |
ANALYSIS PROJECT METADATA | |
Assembly Method
(MIGS-30)
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megahit v. MEGAHIT v1.1.2 |
Scaffold Count
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189639 |
Contig Count
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|
Gene Calling Method
(MIGS-32)
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|
Gene Count |
208456 |
Estimated Size |
96889850 |
Sequencing Depth
(MIGS-31.1)
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|
Annotation Pipeline |
IMG Annotation Pipeline v.5.0.3 |
Added By |
JGI automated process
on 2019-04-12 |
Last Modified By |
JGI automated process
on 2020-12-05 |
ORF Comparison Tools
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16S Recovered
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16S Recovery Software
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PROJECT EXTERNAL REFERENCES | |
IMG Taxon ID
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3300035589 |
IMG RNA-Seq ID |
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Genbank Accession
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Assembly Accession |
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Genbank Release Date |
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SRA Runs |
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ANALYSIS PROJECT COMPOSITION | |
Study |
Marin sediment microbial communities from Baltic Sea, Sweden |
Number of Studies
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1 |
Number of Biosamples
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1 |
Number of Projects
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1 |
Number of Related Analysis Projects
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1 |
JGI INFORMATION | |
ITS Analysis Project ID
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1232104 (Portal) |
ITS Analysis Project Name
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28L metaT Annotation |
ITS Analysis Product Name
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Metagenome Metatranscriptome |
ITS Version Number |
1 |
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