ANALYSIS PROJECT INFORMATION
GOLD Analysis Project ID Ga0370546
Analysis Project Name Prefix Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_121
Analysis Project Name Suffix
Analysis Project Type Metatranscriptome Analysis
IMG Submission ID 211223
Completion Status Complete
Completion Date 2019-06-29
PI Eoin Brodie
Description
Visibility Public
ANALYSIS PROJECT METADATA
Assembly Method (MIGS-30) megahit v. MEGAHIT v1.1.2
IMG Decontamination
IMG Decontamination Method
GenePRIMP
Scaffold Count 310567
Contig Count
Gene Calling Method (MIGS-32)
Gene Count 366579
Estimated Size 154772846
Sequencing Depth (MIGS-31.1)
Annotation Pipeline IMG Annotation Pipeline v.5.0.1
Added By JGI automated process on 2019-02-07
Last Modified By JGI automated process on 2019-05-15
Non-SP-Owner AP No
PROJECT EXTERNAL REFERENCES
IMG Taxon ID 3300034681
IMG RNA-Seq ID
Genbank
Assembly Accession
SRA Runs
ANALYSIS PROJECT COMPOSITION
Study Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States
Number of Studies 1
Number of Biosamples 1
Number of Projects 1
Number of Related Analysis Projects 1
Derived Analysis Projects 1
JGI INFORMATION
ITS Analysis Project ID 1238155 (Portal)
ITS Analysis Project Name ER_RNA_121 Annotation
ITS Analysis Product Name Metagenome Metatranscriptome
ITS NCBI Taxon ID
ITS Version Number

 

 

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