ANALYSIS PROJECT INFORMATION
GOLD Analysis Project ID Ga0340142
Analysis Project Name Prefix Mannheimia haemolytica 63667MH
Analysis Project Name Suffix
Analysis Project Type Genome Analysis (Isolate)
IMG Submission ID 231442
Completion Status Complete
IMG Completion Date 2020-04-23
PI
Analysis Project Description Submitting a public genome from NCBI/GenBank to IMG for analysis.
Visibility Public
ANALYSIS PROJECT METADATA
Assembly Method (MIGS-30) SPAdes v. 3.5.0
IMG Decontamination No
IMG Decontamination Method
Scaffold Count 97
Contig Count
Gene Calling Method (MIGS-32)
Gene Count 2778
Estimated Size 2597465
Sequencing Depth (MIGS-31.1) 23.42x
Annotation Pipeline IMG Annotation Pipeline v.5.0.15
Added By JGI automated process on 2019-01-03
Last Modified By JGI automated process on 2020-05-04
ORF Comparison Tools
16S Recovered
16S Recovery Software
PROJECT EXTERNAL REFERENCES
IMG Taxon ID 2868737119
IMG Metagenome bin count
IMG Predicted viruses
Genbank Accession
Genbank ID LQGQ00000000 (GCA_001931195.1)
Release Date 2017-04-06
NCBI Genbank Version LQGQ01
Genbank Release Date 2017-04-06
ANALYSIS PROJECT COMPOSITION
Study Bovine respiratory disease (BRD) relevant bacteria
Number of Studies 1
Number of Projects 1
Number of Related Analysis Projects 0

 

 

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