ANALYSIS PROJECT INFORMATION
GOLD Analysis Project ID Ga0315741
Analysis Project Name Prefix Forest Soil Metatranscriptomics Site 2 LB Combined Assembly
Analysis Project Name Suffix
Analysis Project Type Combined Assembly
IMG Submission ID 206134
NCBI BioProject ID
NCBI BioProject Accession
NCBI BioSample Accession
Completion Status Complete
IMG Completion Date 2019-01-22
PI Francis M. MARTIN
Description
Visibility Public
ANALYSIS PROJECT METADATA
Assembly Method (MIGS-30) megahit v. MEGAHIT v1.1.2
IMG Decontamination
IMG Decontamination Method
GenePRIMP
Scaffold Count 4079856
Contig Count
Gene Calling Method (MIGS-32)
Gene Count 4692595
Estimated Size 2528048767
Sequencing Depth (MIGS-31.1)
Annotation Pipeline IMG Annotation Pipeline v.4.16.6
Added By JGI automated process on 2018-10-02
Last Modified By JGI automated process on 2019-05-03
Non-SP-Owner AP No
PROJECT EXTERNAL REFERENCES
IMG Taxon ID 3300032739
IMG RNA-Seq ID
Genbank
Assembly Accession
Genbank Release Date
SRA Runs
ANALYSIS PROJECT COMPOSITION
Study Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies
Number of Studies 1
Number of Biosamples 12
Number of Projects 12
Derived Analysis Projects 1
JGI INFORMATION
ITS Analysis Project ID 1227307 (Portal)
ITS Analysis Project Name Forest Soil Metatranscriptomics Site 2 LB Combined Assembly
ITS Analysis Product Name Co-Assembly - Eukaryotic Community Metatranscriptome
ITS NCBI Taxon ID
ITS Version Number

 

 

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