Studies
|
47,488 |
|
Biosamples
|
121,419 |
|
Sequencing Projects
|
388,853 |
|
Analysis Projects
|
310,141 |
| Organisms | 403,380 |
| ANALYSIS PROJECT INFORMATION | |
|---|---|
|
GOLD Analysis Project ID
|
Ga0159040 |
| Analysis Project Name Prefix |
Caldithrix sp. PNA_bin1 |
|
Analysis Project Name Suffix
|
|
|
Analysis Project Type
|
Metagenome-Assembled Genome |
|
IMG Submission ID
|
107020 |
|
NCBI BioProject ID
|
|
|
NCBI BioProject Accession
|
|
|
NCBI BioSample Accession
|
|
| Completion Status |
Complete |
|
IMG Completion Date
|
2017-02-02 |
| PI | Yulin Wang |
| PI Name |
|
|
Analysis Project Description
|
genome bin from metanome |
| Visibility | Public |
| ANALYSIS PROJECT METADATA | |
| GOLD Organism Name |
Caldithrix sp. PNA_bin1 |
|
NCBI Taxonomy ID
|
187144 |
| Phylum | CALDITRICHAEOTA |
| Phylogeny Suggestion |
|
|
Genus
|
Caldithrix |
| Species |
Caldithrix sp. PNA_bin1 |
| Strain |
PNA_bin1 |
| Domain |
BACTERIAL |
| NCBI Superkingdom |
Bacteria |
| NCBI Kingdom |
|
|
Number of tRNAs
|
|
|
tRNA Software
|
|
|
Completeness Strategy
|
|
|
Scaffold Count
|
34 |
|
Contig Count
|
|
|
Binning Method
|
Individual genome bins were extracted using the multi- metagenome principles implemented in the mmgenome R package (http:// madsalbertsen.github.io/mmgenome/). |
|
Binning Parameters
|
|
|
Reassembly Attempted
|
|
|
MAG Coverage Software
|
|
|
Gene Calling Method
(MIGS-32)
|
|
| Gene Count |
2732 |
| Estimated Size |
3219037 |
|
Sequencing Depth
(MIGS-31.1)
|
|
| Contamination Percentage |
|
| Completeness Percentage |
|
| Annotation Pipeline |
IMG Annotation Pipeline v.4.14.3 |
| Added By |
Yulin Wang
on 2016-12-14 |
| Last Modified By |
JGI automated process
on 2019-07-01 |
|
ORF Comparison Tools
|
|
|
16S Recovered
|
|
|
16S Recovery Software
|
|
| PROJECT EXTERNAL REFERENCES | |
|
IMG Taxon ID
|
2713896713 |
|
Genbank Accession
|
|
| Assembly Accession |
|
| Genbank Release Date |
|
| MAG Publication |
|
| ANALYSIS PROJECT COMPOSITION | |
| Study |
Seed sludge microbial communities for the partial nitritation/anammox (PNA) lab-scale SBR reactor set up, Hong Kong |
| Source Analysis Project |
Seed sludge microbial communities for the partial nitritation/anammox (PNA) lab-scale SBR reactor set up, Hong Kong - sample #1 |
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