ANALYSIS PROJECT INFORMATION
GOLD Analysis Project ID Ga0159040
Analysis Project Name Prefix Caldithrix sp. PNA_bin1
Analysis Project Name Suffix
Analysis Project Type Metagenome-Assembled Genome
IMG Submission ID 107020
NCBI BioProject ID
NCBI BioProject Accession
NCBI BioSample Accession
Completion Status Complete
IMG Completion Date 2017-02-02
PI Yulin Wang
PI Name
Analysis Project Description genome bin from metanome
Visibility Public
ANALYSIS PROJECT METADATA
GOLD Organism Name Caldithrix sp. PNA_bin1
NCBI Taxonomy ID 187144
Phylum CALDITRICHAEOTA
Phylogeny Suggestion
Genus Caldithrix
Species Caldithrix sp. PNA_bin1
Strain PNA_bin1
Domain BACTERIAL
NCBI Superkingdom Bacteria
NCBI Kingdom
Number of tRNAs
tRNA Software
Completeness Strategy
Scaffold Count 34
Contig Count
Binning Method Individual genome bins were extracted using the multi- metagenome principles implemented in the mmgenome R package (http:// madsalbertsen.github.io/mmgenome/).
Binning Parameters
Reassembly Attempted
MAG Coverage Software
Gene Calling Method (MIGS-32)
Gene Count 2732
Estimated Size 3219037
Sequencing Depth (MIGS-31.1)
Contamination Percentage
Completeness Percentage
Annotation Pipeline IMG Annotation Pipeline v.4.14.3
Added By Yulin Wang on 2016-12-14
Last Modified By JGI automated process on 2019-07-01
ORF Comparison Tools
16S Recovered
16S Recovery Software
PROJECT EXTERNAL REFERENCES
IMG Taxon ID 2713896713
Genbank Accession
Assembly Accession
Genbank Release Date
MAG Publication
ANALYSIS PROJECT COMPOSITION
Study Seed sludge microbial communities for the partial nitritation/anammox (PNA) lab-scale SBR reactor set up, Hong Kong
Source Analysis Project Seed sludge microbial communities for the partial nitritation/anammox (PNA) lab-scale SBR reactor set up, Hong Kong - sample #1

 

 

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