ANALYSIS PROJECT INFORMATION
GOLD Analysis Project ID Ga0115062
Analysis Project Name Prefix Proteiniphilum sp. EBM-39
Analysis Project Name Suffix
Analysis Project Type Metagenome-Assembled Genome
IMG Submission ID 81397
NCBI BioProject ID
NCBI BioProject Accession
NCBI BioSample Accession
Completion Status Complete
IMG Completion Date 2016-03-23
PI John Coates
Description Trimmed reads based on quality (Sickle v 1.33), assembled trimmed reads (Megahit v 1.0.2), mapped reads to contigs to assess quality and coverage (BWA-MEM v 0.7.10), binned contigs and assigned taxonomy (Anvi’o v 1.1.0), assessed bin quality (CheckM v 1.0.1)
Visibility Public
ANALYSIS PROJECT METADATA
GOLD Organism Name Proteiniphilum sp. EBM-39
NCBI Taxonomy ID 294702
Phylum BACTEROIDETES
Domain BACTERIAL
NCBI Superkingdom Bacteria
NCBI Kingdom
Scaffold Count 169
Contig Count 170
Binning Method Anvi'o v 1.1.0 (TNF, GC content, & coverage across multiple samples)
Gene Calling Method (MIGS-32) Prodigal v 2.6.2
Gene Count 1882
Estimated Size 2088634
Sequencing Depth (MIGS-31.1)
Contamination Percentage
Completeness Percentage
Annotation Pipeline IMG Annotation Pipeline v.4.10.0
Added By Israel Figueroa on 2016-03-10
Last Modified By Supratim Mukherjee on 2017-05-02
Non-SP-Owner AP No
PROJECT EXTERNAL REFERENCES
IMG Taxon ID 2657245166
Genbank Accession
Assembly Accession
Genbank Release Date
SRA Runs
MAG Publication
ANALYSIS PROJECT COMPOSITION
Study Sludge microbial communities from wastewater anaerobic digester in Oakland, CA, USA - phosphite and CO2 enriched
Source Analysis Project Sludge microbial communities from wastewater anaerobic digester in Oakland, CA, USA - phosphite and CO2 enriched

 

 

  You are going to add the following user to your analysis project, project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  You are going to remove permissions for the following user to your analysis project, project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  Changing the AP visibility will also change visibility on the following items:

 

Do you want to continue with this visibility change?

 

 

  Changing the AP visibility will also change downgrade visibility on the following items:

 

Do you want to continue with this visibility change?