ANALYSIS PROJECT INFORMATION
GOLD Analysis Project ID Ga0109795
Analysis Project Name Prefix Methanosarcina mazei 1.H.T.2.1
Analysis Project Name Suffix
Analysis Project Type Genome Analysis (Isolate)
IMG Submission ID 90290
Completion Status Complete
IMG Completion Date 2016-06-30
PI
Description Submitting a public genome from NCBI/GenBank to IMG for analysis.
Visibility Public
ANALYSIS PROJECT METADATA
Assembly Method (MIGS-30) IDBA-UD v. 1.1.0
IMG Decontamination Yes
IMG Decontamination Method PhiX decontamination
GenePRIMP No
Scaffold Count 153
Contig Count
Gene Calling Method (MIGS-32)
Gene Count 3571
Estimated Size 4073761
Sequencing Depth (MIGS-31.1) 44.1x
Annotation Pipeline IMG Annotation Pipeline v.4.11.4
Added By JGI automated process on 2016-02-04
Last Modified By JGI automated process on 2017-11-21
Non-SP-Owner AP No
PROJECT EXTERNAL REFERENCES
IMG Taxon ID 2681813122
Genbank Accession
Genbank ID JJQZ00000000 (GCA_000980135.1)
Release Date 2015-08-20
NCBI Genbank Version JJQZ01
Assembly Accession GCA_000980135.1
Genbank Release Date 2015-08-20
SRA Runs
ANALYSIS PROJECT COMPOSITION
Study Methanosarcina Genome sequencing of Methanosarcina mazei strains isolated from sediment environments in the Columbia River Estuary in Oregon, USA
Number of Studies 1
Number of Projects 1
Number of Related Analysis Projects 0

 

 

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